A new approach to summarize metabolism similarity, mechanistic similarity (alert similarity) and physical chemical similarity between your target chemical and its analogues into a single score to facilitate the choice of the most suitable analogue(s) for a read-across has been published by Cathy Lester (The Procter & Gamble Co).
We'll include a description of this method in the 2023 update of our tutor-assisted eLearning course "NAMs - Use and application of QSAR and read-across".
To red the paper:
Lester, C.; Byrd, E.; Shobair, M.; Yan, G.
Quantifying Analogue Suitability for SAR-Based Read-Across Toxicological Assessment.
Chem. Res. Toxicol. 2023.
Abstract of the paper
Structure activity relationship (SAR)-based read-across often is an integral part of toxicological safety assessment, and justification of the prediction presents the most challenging aspect of the approach. It has been established that structural consideration alone is inadequate for selecting analogues and justifying their use, and biological relevance must be incorporated. Here we introduce an approach for considering biological and toxicological related features quantitatively to compute a similarity score that is concordant with suitability for a read-across prediction for systemic toxicity. Fingerprint keys for comparing metabolism, reactivity, and physical chemical properties are presented and used to compare these attributes for 14 case study chemicals each with a list of potential analogues. Within each case study, the sum of these nonstructural similarity scores is consistent with suitability for read-across established using an approach based on expert judgment. Machine learning is applied to determine the contributions from each of the similarity attributes revealing their importance for each structure class. This approach is used to quantify and communicate the differences between a target and a potential analogue as well as rank analogue quality when more than one is relevant. A numerical score with easily interpreted fingerprints increases transparency and consistency among experts, facilitates implementation by others, and ultimately increases chances for regulatory acceptance.